FitCorCbm; seed = 123datasetBinned123.RdA binned dataset suitable for analysis by FitCorCbm. It was generated by
DfCreateCorCbmDataset by setting the seed variable to 123. Note
the formatting of the data as a single modality two reader dataset, even though
the actual pairing might be different, see FitCorCbm. The dataset is
intentionally large so as to demonstrate the asymptotic convergence of ML estimates,
produced by FitCorCbm, to the population values. The data was generated
by the following argument values to DfCreateCorCbmDataset: seed = 123,
K1 = 5000, K2 = 5000, desiredNumBins = 5, muX = 1.5, muY = 3, alphaX = 0.4,
alphaY = 0.7, rhoNor = 0.3, rhoAbn2 = 0.8.
datasetBinned123A list with 3 elements: $ratings, $lesions and $descriptions; $ratings
contain 3 elements, $NL, $LL and $LL_IL as sub-lists; $lesions
contain 3 elements, $perCase, $IDs and $weights as sub-lists; $descriptions
contain 7 elements, $fileName, $type, $name,
$truthTableStr, $design, $modalityID and $readerID as sub-lists;
rating$NL, num [1, 1:2, 1:10000, 1], ratings of non-lesion localizations, NLs
rating$LL, num [1, 1:2, 1:5000, 1], ratings of lesion localizations, LLs
rating$LL_ILNA, this placeholder is used only for LROC data
lesions$perCase, int [1:5000], number of lesions per diseased case
lesions$IDs, num [1:5000, 1] , numeric labels of lesions on diseased cases
lesions$weights, num [1:5000, 1], weights (or clinical importances) of lesions
descriptions$fileName, chr, "datasetBinned123", base name of dataset in `data` folder
descriptions$type, chr "ROC", the data type
descriptions$name, chr "SIM-CORCBM-SEED-123", the name of the dataset
descriptions$truthTableStr, NA, truth table structure
descriptions$design, chr "FCTRL-X-MOD", study design, factorial dataset
descriptions$modalityID, chr "1", modality label(s)
descriptions$readerID, chr [1:2] "1" "2", reader labels
Zhai X, Chakraborty DP (2017). A bivariate contaminated binormal model for robust fitting of proper ROC curves to a pair of correlated, possibly degenerate, ROC datasets. Medical Physics. 44(6):2207--2222.
res <- str(datasetBinned123)
#> List of 3
#> $ ratings :List of 3
#> ..$ NL : num [1, 1:2, 1:10000, 1] 1 2 1 1 3 1 2 3 1 3 ...
#> ..$ LL : num [1, 1:2, 1:5000, 1] 2 3 2 1 3 2 1 1 2 1 ...
#> ..$ LL_IL: logi NA
#> $ lesions :List of 3
#> ..$ perCase: num [1:5000] 1 1 1 1 1 1 1 1 1 1 ...
#> ..$ IDs : num [1:5000, 1] 1 1 1 1 1 1 1 1 1 1 ...
#> ..$ weights: num [1:5000, 1] 1 1 1 1 1 1 1 1 1 1 ...
#> $ descriptions:List of 7
#> ..$ fileName : chr "datasetBinned123"
#> ..$ type : chr "ROC"
#> ..$ name : chr "SIM-CORCBM-SEED-123"
#> ..$ truthTableStr: logi NA
#> ..$ design : chr "FCTRL"
#> ..$ modalityID : chr "1"
#> ..$ readerID : chr [1:2] "1" "2"